concertina226 (2447056) writes "Understanding how retroviruses are passed down through our DNA could be the key to helping researchers re-programme normal cells to become stem cells for treating diseases. Researchers from Canada and Singapore have discovered that the ancient viruses which entered our ancestors' genomes thousands of years ago have altered the way our cells behave; the material left by dead viruses in our cells is the answer. 1,000 copies of one particular class of retroviruses, known as the human endogenous retrovirus HERV-H, is still in our genome, and while the HERV-H retrovirus DNA is dead and cannot replicate itself, it continues to send out messages telling the embryonic stem cell how to become other cells in the body, and this is what makes the cells pluripotent."

New submitter dunnomattic writes: "Researchers at New York University School of Medicine have achieved a milestone in synthetic biology. A fully synthetic yeast chromosome, dubbed 'synIII,' has successfully replaced chromosome 3 of multiple living yeast cells. The researchers pieced together over 250,000 nucleotide bases to accomplish this feat. Dr. Jef Boeke, the lead author of the study, says, 'not only can we make designer changes on a computer, but we can make hundreds of changes through a chromosome and we can put that chromosome into yeast and have a yeast that looks, smells and behaves like a regular yeast, but this yeast is endowed with special properties that normal yeasts don't have.' Work is underway (abstract) to synthesize the remaining 15 chromosomes."

sciencehabit (1205606) writes "In the latest twist in the story of STAP cells, a new kind of stem cell described in two Nature papers in January, a scientist is live-blogging his latest attempt to generate the cells. The papers described how subjecting cells from newborn mice to a mildly acidic solution turned them into pluripotent stem cells, the sought-after cells that can become all the body's cell types. Kenneth Ka-Ho Lee, a stem cell researcher at the Chinese University of Hong Kong, has already tried once to make the cells, following the methods published in Nature in January. That attempt failed, which Lee documented publicly on the website ResearchGate. The lack of success mirrors other reports from scientists around the world in the weeks since the papers were published, despite a more detailed set of methods posted by some of the authors on 5 March. Today, Lee posted in the comment section of his ResearchGate review that he had set up a team of four lab members to do the experiments. They will live blog the research, and promise frequent updates."

The Register reports on an approach to nanotech that combines biological computing with micro-mechanics, embodied in the work of MIT associate professor Timothy Lu. Lu's research has resulted in the creation of tiny structures assembled using modified E. coli. "Specifically," says the article, "the MIT researchers were able to put bacteria to work producing conducting biofilms, some of which were studded with quantum dots, and arranging gold nanowires. This paves the way for the development of mass manufactured cell-based material factories, and even 'living materials' that have some of the desirable properties of bones or trees, Lu confirmed." His most radical idea, says Lu, is furniture that shapes itself to cushion the user's most-stressed areas.

An anonymous reader writes "Vanderbilt researchers say they've shown it's possible to selectively manipulate our ability to learn by applying a mild electrical current to the brain. Using an elastic headband that secured two electrodes conducted by saline-soaked sponges to the cheek and the crown of the head, the researchers applied 20 minutes of transcranial direct current stimulation (tDCS) to each subject. Depending on the direction of the current, subjects either learned more quickly, slower, or in the case of a sham current, with no change at all. The [paywalled] study appears in the current issue of the Journal of Neuroscience."

First time accepted submitter Todd Palin (1402501) writes "Researchers at Penn State university are trying to reconstruct images of faces based only on a DNA sample of the individual. As far out as this sounds, they did a pretty good job at matching the actual appearance of the faces. This is a pretty good start on a whole new use for DNA samples. Imagine a mug shot of a rapist based only on a DNA sample."

sciencehabit (1205606) writes "Using a single pollinated pine seed, researchers have sequenced the entire genome of the loblolly pine tree--and it's a doozy. The tree's genome is largest yet sequenced: 22.18 billion base pairs, more than seven times longer than the human genome. The team found that 82% of the genome was made up of duplicated segments, compared with just 25% in humans. The researchers also identified genes responsible for important traits such as disease resistance, wood formation, and stress response."

Hugh Pickens DOT Com (2995471) writes "Like something out of the movie Inception, Rhiannon Williams reports in the Telegraph that Dr. Rebecca Roache, in charge of a team of scholars focused upon the ways futuristic technologies might transform punishment, claims the prison sentences of serious criminals could be made worse by distorting prisoners' minds into thinking time was passing more slowly. 'There are a number of psychoactive drugs that distort people's sense of time, so you could imagine developing a pill or a liquid that made someone feel like they were serving a 1,000-year sentence,' says Roache. Roache says when she began researching this topic, she was thinking a lot about Daniel Pelka, a four-year-old boy who was starved and beaten to death by his mother and stepfather.

'I had wondered whether the best way to achieve justice in cases like that was to prolong death as long as possible. Some crimes are so bad they require a really long period of punishment, and a lot of people seem to get out of that punishment by dying. And so I thought, why not make prison sentences for particularly odious criminals worse by extending their lives?' Thirty years in prison is currently the most severe punishment available in the UK legal system. 'To me, these questions about technology are interesting because they force us to rethink the truisms we currently hold about punishment. When we ask ourselves whether it's inhumane to inflict a certain technology on someone, we have to make sure it's not just the unfamiliarity that spooks us,' says Roache. 'Is it really OK to lock someone up for the best part of the only life they will ever have, or might it be more humane to tinker with their brains and set them free? When we ask that question, the goal isn't simply to imagine a bunch of futuristic punishments — the goal is to look at today's punishments through the lens of the future.'"

An anonymous reader writes "Though warned by scientists that overuse of a variety of corn engineered to be toxic to corn rootworms would eventually breed rootworms with resistance to its engineered toxicity, the agricultural industry went ahead and overused the corn anyway with little EPA intervention. The corn was planted in 1996. The first reports of rootworm resistance were officially documented in 2011, though agricultural scientists weren't allowed by seed companies to study the engineered corn until 2010. Now, a recent study has clearly shown how the rootworms have successfully adapted to the engineered corn. The corn's continued over-use is predicted, given current trends, and as resistance eventually spreads to the whole rootworm population, farmers will be forced to start using pesticides once more, thus negating the economic benefits of the engineered corn. 'Rootworm resistance was expected from the outset, but the Bt seed industry, seeking to maximize short-term profits, ignored outside scientists.'"

sciencehabit writes "The cancer gene BRCA1, which keeps tumors in the breast and ovaries at bay by producing proteins that repair damaged DNA, may also regulate brain size. Mice carrying a mutated copy of the gene have 10-fold fewer neurons and had other brain abnormalities, a new study (abstract) suggests. Such dramatic effects on brain size and function are unlikely in human carriers of BRCA1 mutations, the authors of the study note, but they propose the findings could shed light on the gene's role in brain evolution."

Zothecula writes "A European project coordinated by Ikerlan and CIC microGUNE is developing a James Bond-style automated laboratory called 'LABoratory skin patches and smart cards based ON FOILs and compatible with a smartphone' (LABONFOIL). Using lab-on-a-chip technology and smart patches to detect a wide variety of substances and diagnose diseases, the goal of the project is to create a cheap, portable laboratory that can interact with smart devices."

Georgetown researcher (and executive dean of Georgetown's medical school) Howard Federoff has taken a "systems" approach to diagnostics for certain chronic diseases. By comparing blood samples taken from patients who subsequently developed Alzheimer's to blood samples after the disease has manifested, Federoff has identified markers and created a blood test that is described as "90 percent accurate" (the BBC article does not delve into the ratio of false positives to false negatives) in predicting whether a currently healthy patient is likely to develop Alzheimer's in the following three years. Understandably, this raises some ethical and practical questions. What would you do differently if this test came back positive for yourself? Or for a parent? Here's the (paywalled) paper, at Nature Medicine.

An anonymous reader writes "Hot on the heels of Google's spin-off company Calico, another major contender has emerged in the race to develop technologies for extending healthy human lifespan. Dr Craig Venter, who was first to map the entire human genetic code and the first to engineer a synthetic lifeform, has teamed up with founder of the X-Prize, Dr Peter Diamandis, to create Human Longevity Inc. 'Your age is your No. 1 risk factor for almost every disease,' said Dr. Venter. 'Using the combined power of our core areas of expertise—genomics, informatics, and stem cell therapies, we are tackling one of the greatest medical/scientific and societal challenges — aging and aging related diseases,' said Dr. Venter. 'Between 1910 and 2010 improvements in medicine and sanitation increased the human lifespan by 50 percent from 50 to 75 years.....our goal is to make 100-years-old the new 60,' said Diamandis."

Daniel Dvorkin writes "When I first started studying bioinformatics almost fifteen years ago (!) what drew me to the field was the promise that we might soon be able to provide effective, personalized treatments for a wide variety of diseases. There have been some successes along the way, like genetic tests for warfarin dosage, but for the most part our gains in understanding of basic biology haven't been matched by clinical advances. Now it looks like that is at long last about to change, and it's about time.

Too many people suffer and die from too many diseases that we more or less understand, but can't effectively treat. I hated it when I worked in hands-on patient care, and I hate it now in the lab. We are, finally, getting there."

sciencehabit writes "Don't expect an artificial chicken in every pot anytime soon. Since 2008, the animal rights organization People for the Ethical Treatment of Animals (PETA) has offered $1 million to anyone able to create a commercially viable artificial meat from growing chicken cells. But although scientists are making progress toward artificial hamburgers, even a 2-year extension from the original deadline of 2012 wasn't enough to lure applicants for PETA's prize."

Taco Cowboy writes "Dirty water is a major cause of mortality in the developing world. 'The most common water-borne pathogens are bacteria (e.g. Escherichia coli, Salmonella typhi, Vibrio cholerae), viruses (e.g. adenoviruses, enteroviruses, hepatitis, rotavirus), and protozoa (e.g. giardia). These pathogens cause child mortality and also contribute to malnutrition and stunted growth of children.' People have been working on engineering cheaper and cheaper filtration systems for years, but now a group of researchers has found a promising and simple solution: a tree branch. 'Approximately 3 cm^3 of sapwood can filter water at the rate of several liters per day, sufficient to meet the clean drinking water needs of one person.' 'Before experimenting with contaminated water, the group used water mixed with red ink particles ranging from 70 to 500 nanometers in size. After all the liquid passed through, the researchers sliced the sapwood in half lengthwise, and observed that much of the red dye was contained within the very top layers of the wood, while the filtrate, or filtered water, was clear. This experiment showed that sapwood is naturally able to filter out particles bigger than about 70 nanometers.' The team tested E. coli-contaminated water, and the branch was able to filter out 99 percent of the bacterial cells."

sciencehabit writes "The U.K. government today issued proposed regulations that would allow researchers to try a new and controversial in vitro fertilization (IVF) procedure in patients. The technique could allow women who are carriers of mitochondrial disease to have healthy, genetically related children. But it also transfers DNA from one egg or embryo into another, a form of genetic alteration that could be passed on to future generations. Altering the genes of human egg cells or embryos in IVF procedures is now forbidden in the United Kingdom."

Lasrick writes "Alexis Madrigal at the Atlantic: 'The marvelous thing about horseshoe crab blood, though, isn't the color. It's a chemical found only in the amoebocytes of its blood cells that can detect mere traces of bacterial presence and trap them in inescapable clots.' Madrigal continues, 'To take advantage of this biological idiosyncrasy, pharmaceutical companies burst the cells that contain the chemical, called coagulogen. Then, they can use the coagulogen to detect contamination in any solution that might come into contact with blood. If there are dangerous bacterial endotoxins in the liquid—even at a concentration of one part per trillion—the horseshoe crab blood extract will go to work, turning the solution into what scientist Fred Bang, who co-discovered the substance, called a "gel." ... I don't know about you, but the idea that every single person in America who has ever had an injection has been protected because we harvest the blood of a forgettable sea creature with a hidden chemical superpower makes me feel a little bit crazy. This scenario is not even sci-fi, it's postmodern technology.'"

An anonymous reader writes "Here's a neat story out of Britain, with good news about long-term success for the patient involved, and for others who might benefit from similar procedures: three years ago, surgeon Craig Gerrand successfully printed and implanted an artificial pelvis (actually, about half of one) into a patient suffering from a rare form of cancer. Other techniques were ruled out, because the patient would be losing so much bone. So, after careful scanning, additive printing with titanium was used to create the replacement: 'In order to create the 3-D printed pelvis, the surgeons took scans of the man's pelvis to take exact measurements of how much 3-D printed bone needed to be produced and passed it along to Stanmore Implants. The company used the scans to create a titanium 3-D replacement, by fusing layers of titanium together and then coating it with a mineral that would allow the remaining bone cells to attach.' Now, three years after the procedure, the printed pelvis is holding up just fine, and the patient is able to walk with a cane."

Nemo the Magnificent writes with this excerpt from the University of Arizona: "A new study (paywalled) published in the journal Nature provides the most comprehensive analysis to date of the evolutionary relationships of influenza virus across different host species over time... In the 1870s, an immense horse flu outbreak swept across North America. City by city and town by town, horses got sick and perhaps five percent of them died. Half of Boston burned down during the outbreak, because there were no horses to pull the pump wagons. In the West, the U.S. Cavalry was fighting the Apaches on foot because all the horses were sick... The horse flu outbreak pulled the rug out from under the economy.""